PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.HT46D
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 454aa    MW: 50012.9 Da    PI: 6.92
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.HT46DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00022108130123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+Cp Cg sF++ ++   H  t+
  Aradu.HT46D 108 YECPVCGNSFRSEDEVSEHVDTC 130
                  99****************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.908.4E-92452No hitNo description
PROSITE profilePS501579.515108138IPR007087Zinc finger, C2H2
CDDcd092122.57E-18163252No hitNo description
SuperFamilySSF1435033.92E-17165253IPR018997PUB domain
PfamPF094096.2E-16168243IPR018997PUB domain
SMARTSM005803.5E-14169236IPR018997PUB domain
SuperFamilySSF542363.88E-14314427IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.908.4E-9331425No hitNo description
PROSITE profilePS5003311.302343427IPR001012UBX domain
PfamPF007893.3E-5343423IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDDVKDKMKG FMKKVNNSFT SSSSAKFKGQ GRVLGSSSSP SPPPYATANS TSTPRPRPLN  60
SNPTPPPHKA TASSAERDPK PPTSGFDPFD SFVTSSKRSQ NGYSLNVYEC PVCGNSFRSE  120
DEVSEHVDTC LSNNAERGDV SQLADTGADS NAELEVCVGT YVSGKPSHGS IDILLKLLKN  180
VVREPENAKF RKIRLANPKI KEAIAEVIGG TELICFLGFE LKDENGETWA VMELPSEEQI  240
RLINKATLLL ESQQVSPKSE NLAAASADNI DAKPESKPID RQVKVFFAVP ETIAAKIELP  300
DSFYKLSVEE VRREAELRRK KIEESQLLIP KSLKEKQAKA AKKRYTKAII RIQFPDGVVL  360
QGVFSPWEPT MALYEFVSSA LKQPCLEFEL MHPVVVRRQA IPRFAKAGEN SKTLEDEDLV  420
PSALIKFKPL ETDSVVFTGL KNELLQISEP LVNA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045362e-97AP004536.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT15N19, TM0097b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015957231.10.0PREDICTED: plant UBX domain-containing protein 2
SwissprotQ9ZU930.0PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLI1KQ730.0I1KQ73_SOYBN; Uncharacterized protein
STRINGGLYMA08G04760.50.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89442529